miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|204063492|gb|FD198466.1|FD198466 AGAGGAAGGAGGGGAGAGTGGTTGAGGAGGAGAGAATCAGAGAGGAACTGACACATGACCACAAAGTGGATGAAGGTGAG
AAGCTTCCTGCTTATCAGCGCTACCACACACTAGCTCAGGACGTTCCCCCTGGCCTCACCCTGCCCTTCAAATACAAGGT
TTTAGCAGAAATGTTCCGCAGTATGGACACCATCGTCGGCATGCTCTTCAACCGCTTGGAAACCGTCACCTTCGCCAAAG
TCAAACAAGGAGTCCAGGACATGATGCACAAGCATTTTGAAGAGTCTCACATAGGACAGATTAAGGCGGTGTACCCATCC
GCCTACACCTTAAGGCAGGAGAAAAACATCCCGACCTTCAGCGCTACAGTGAAGAAATCCACCTACCAGCTCACTGTGGA
GCCGCTCATCGAAGAAGAAACAAACGGCGCCCGCCCCGTCCTGTCGGCTACTCGTCTGCTGGAGAGAAGACGCGCGTTTC
ATCAGAACCTGCTGGAAATCGTGAAGGGACACCATAAGGTGTTCCTAGCTTCGTTGAGCCCTCCTTTAGTGGTCCCTGAT
GATAAACTAACCCGCTGGCATCCCAAATTCAACGTGGACGAGGTGCCCAACATCCTGCCCAGCGACTTGCCTCAGCCTCC
ACAGACGGAGAAACTCACCACTGCTCAGGAAGTGTTGGACAGAGCTCGCACCCTCATGACCCCTAAGATGGAGAAGGCTT
TGGCTAACATGGCCTTAAAAACAGCAGAGGCAGCTTGTTCAAAAGCGAGCGAGACACCAGTAAAAC




Most similar to sp|Q9I9A7|CDT1_XENLA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9I9A7|CDT1_XENLA DNA replication factor Cdt1 OS=Xenopus laevis
           GN=cdt1 PE=1 SV=2
          Length = 617

 Score =  337 bits (863), Expect = 7e-92
 Identities = 164/234 (70%), Positives = 195/234 (83%), Gaps = 1/234 (0%)
 Frame = +3

Query: 57  DHKVDEGEKLPAYQRYHTLAQDVPPGLTLPFKYKVLAEMFRSMDTIVGMLFNRLETVTFA 236
           +    E EK PAYQR+H LAQD  PGLTLP+KYKVLAEMFRSMDTIVGMLFNR ET+TF+
Sbjct: 230 EQPAQESEKAPAYQRFHNLAQDAAPGLTLPYKYKVLAEMFRSMDTIVGMLFNRSETITFS 289

Query: 237 KVKQGVQDMMHKHFEESHIGQIKAVYPSAYTLRQEKNIPTFSATVKKSTYQLTVEPLIEE 416
           KVKQGVQDMM K FE+ ++GQIK VYP+AY  RQEKNIPTF   VKK+ YQLT+EPL+ E
Sbjct: 290 KVKQGVQDMMRKQFEQRNVGQIKTVYPNAYKYRQEKNIPTFKDGVKKTDYQLTIEPLVAE 349

Query: 417 -ETNGARPVLSATRLLERRRAFHQNLLEIVKGHHKVFLASLSPPLVVPDDKLTRWHPKFN 593
            +    RP LSA+RLLER++ FH++L  IVK HH+VFL SL+PP++VPDDKLTRWHP+FN
Sbjct: 350 GDMLSGRPHLSASRLLERKQLFHRSLTSIVKQHHRVFLTSLNPPMLVPDDKLTRWHPRFN 409

Query: 594 VDEVPNILPSDLPQPPQTEKLTTAQEVLDRARTLMTPKMEKALANMALKTAEAA 755
           VDEV ++ P++LP PPQ E+LTTAQEVL +AR L+TPKMEKALAN+ALKTAE A
Sbjct: 410 VDEVLDVTPAELPLPPQVERLTTAQEVLSKARGLITPKMEKALANLALKTAENA 463